NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209350_1000458

Scaffold Ga0209350_1000458


Overview

Basic Information
Taxon OID3300026277 Open in IMG/M
Scaffold IDGa0209350_1000458 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23287
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004353Metagenome / Metatranscriptome442Y
F010390Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0209350_100045816F004353AGGAGGMKNVGRVLLTTVAGLTLVVAVWAFSPPTTHMAALLSLSSNSNAPQEQSVSGKIASVEKTSFTLTVGQSQTHNLQQDPSTPKTMTFMIDKNTTIDGSLKVGASADVTYRQERGSNVAISVRVTS
Ga0209350_100045817F010390AGGMRRFFAVLLCSVSLLANPAFGQSVAIAPVRVAAGAVLKFHLQTRLNQTTGDALDALPKGTVLEVGMLDSVDSDIDRDGTEFHGTLVTPLLMEGEVIVHSEAEVRGLLVLLRSKSHPEGFRYELLVTGLTDRGKSYDLTASLNPSFVDTATQPAADSKSATK
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