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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026277 Open in IMG/M |
| Scaffold ID | Ga0209350_1000667 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17508 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006466 | Metagenome | 372 | Y |
| F010312 | Metagenome | 305 | N |
| F012762 | Metagenome | 277 | Y |
| F013280 | Metagenome / Metatranscriptome | 272 | Y |
| F014110 | Metagenome / Metatranscriptome | 265 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209350_100066711 | F012762 | AGGA | LLEAKRGVQSLLPTSLEEDPSLGTLDKFPTVLHARASFSFDINPESLQKALVSALASLRTNPKSREITVADQDGYSKGQVAFKLGIGNSDGFDVLDSKEEERVLQRIENQGSLDILDLAFQLHYSLSDGRRHRVHEDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELVKLIIQELNVELTRDRYAQVELEAVEIT |
| Ga0209350_100066714 | F010312 | GGCGG | MASPKKELMMLRVFRLTLPAALLVSLTWMTLFTDSARQAVINSLGANANIIIFILGLFLVLGLYWVMGVYERKILYENHHARPAF |
| Ga0209350_100066716 | F014110 | AGGAG | VDLARLPGKIGSAVDFLREHVKSLNGRVSTKGNQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGILEIVPPHLVTHTKQDAAATPPLAAATMPYFFPGAPAPVSTDKRRRKKS |
| Ga0209350_10006674 | F006466 | GGGGG | MSLGNRAAIYAASGSLLLLIVWGKVAGDLYGFPGPDSAVLLLQFMLVIFLMEASITVLTLDSAIKPLEGKNDDLSESARMRAMRWERVQFFNLGKLTAASFVLSLGLLILGSLVSVSFNEIAFSGVLVLAAVVAIFVLLTYRREPEERKRSVK |
| Ga0209350_10006677 | F013280 | N/A | LNTIRLLFWSAVAYGLLLVFVRGIFPSESAPTISLTGIPLIVIVVMMVRDLTRRSTTPTVRRPIATSTGFRWNHVQFLSGQFRVAASASNSYFENVVRARLRELLTTKVSLETGLDDATLRRILSDPMEGPGLLEDETLYRMLYGPTPKGELARINLIGDAIDLIGAWKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |