NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209350_1000777

Scaffold Ga0209350_1000777


Overview

Basic Information
Taxon OID3300026277 Open in IMG/M
Scaffold IDGa0209350_1000777 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15908
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003458Metagenome485Y
F018523Metagenome / Metatranscriptome234N
F076915Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209350_100077712F003458GAGMMVESRIPPGASLLLMGSGLYWILSSELISSFTVLTPGQFQTDALGTLFITVVGIISTAVGLWIVKVDFDELRNLFSRRDGWIFTVPLGLVAADVYLTLIVLSTSSQIVELNPFVSSAIGIGAAALVPFIVSYLALSQGLGLFMLRIGSYLFGPLKSYRYLPFVSICGAAAFGPASNLALLIDHTAGLVAYLLGALGCVMLSMFLFTKIEKP
Ga0209350_100077715F018523GGCGGMTVAEEIEEPKTVLDSQPTGHLTTIPAQKPIIPTTLREFRILAKRLAYNIVTGYVEHDRGHLDKSAEAFFQVYLHLFPDLNPIRSWRAAELYVKILVKQDEIENYPGHDRTQIVDDPHWEEVRTMFLDFSRILGIPDSYADSTMNYYRFHGVRDSRYVNYCIESDRVFNSRVIGNDYWSKILGSLLLILTECHDKHDPMGLEMGLQFGTKYFEIILRARSAASQKTPGLVA
Ga0209350_10007779F076915AGGMASSQASAVQKQKPTLEEEVFKLKLEWMMAKNDDEKRRISEEIRRRIGFTPSKSQ
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