Scaffold Ga0209350

Basic Information
Taxon OID	3300026277 Open in IMG/M
Scaffold ID	Ga0209350_1001237 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209350_1001237 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11473
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11473

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F007303	Metagenome / Metatranscriptome	353	Y
F024516	Metagenome	205	N
F078482	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_10012371	F000611	N/A	IAPVTGRWDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPSKKLESQMALGFSLLNVQHTSVENTIKQLSNIPGFVEACTVPGQFDIVALWQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA
Ga0209350_10012374	F007303	N/A	MPSVMGTKEFLYFQQTIRDLERQVDILLREAATNGPSRRTRELTEKVYILAERAKQIRLPEDRNQSTTNQSILEKLPKQFDEDFGKFKGLTTFVEWVRKQHYNATGHNLGRTYGSFGTKEISPGHHHGKLTMDTLEIRCDACGNESPQSERRDYPIHVLLHDHGQWEVCTGQSDCECQGYEGKGVRIGVNLSPERLGKGRA
Ga0209350_10012376	F078482	GGA	LETKLGHEGRIRSSRLGALFGVMGSVLYITRFFLPTSAENPAESLANYDGRLAVVFGLVSTFSGIFLISFALSLRTALPKRDSVLTTAAVVFSIIASIVPVVVNLIVLDARATLAGIYNNSTVTAVDKAAALVSEQVLEAEEEAVFALFVGAPLAIGLFSGSMWNSRVFPNWLTYVGLSFITITGVALLLVAVGVAVPVLGFAYYGLFLLWILASSGYLYRSDRKTATTDPRYARST
Ga0209350_10012378	F024516	GGAGG	LKRGYVVIFAQFGLIVLLVYGLTAEYRSNAYQQDWISSNVPWLQYLLNGYLAAMLLGVFLGGGVLLATDYLRNRNRKGSLRTVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209350_1001237

Overview

Ecosystem & Geography

Associated Families

Sequences