NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209350_1001302

Scaffold Ga0209350_1001302


Overview

Basic Information
Taxon OID3300026277 Open in IMG/M
Scaffold IDGa0209350_1001302 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11096
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009738Metagenome / Metatranscriptome313N
F039574Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0209350_100130215F009738GGAGGLRQIPEMSKQTPKQEAKEETAKAASFRPVGLSISSFFYALSGVYYLAFPIVAQDTGAWHLYAIGAASLLGSFGLFTMTRWGLWLGLLLFPLQIVAPASTLLTVLSYPGVWQQPIAIAFVASLFVLMFFASLTFLLVLDKRRSFK
Ga0209350_10013029F039574N/AMNYPYAAWRRILFVAVLVVIIVIAFAPATTQGTLFLRFSSISSPSAVNHLYVGFTQIALHQVGYLNSSGWIIISQSFPVLDLSSTPIIPPTVTSAPIHSGRYDELRVAFTNSTVVIAGQKTSIPSPSTLVANVTLPVPPSGIGDIMLVVAFDYSALFSSPPSLSFVLIRASAV
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