Scaffold Ga0209017

Basic Information
Taxon OID	3300026280 Open in IMG/M
Scaffold ID	Ga0209017_10006804 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209017_10006804 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4736
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4736

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.534

Long. (^o)

-110.7978

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035590	Metagenome / Metatranscriptome	171	N
F042114	Metagenome / Metatranscriptome	158	Y
F043791	Metagenome / Metatranscriptome	155	N
F049435	Metagenome / Metatranscriptome	146	Y
F052993	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209017_100068042	F049435	N/A	MFLCFIDLLPASKAQSEIVFYVRTGPFILPKLPLRIYLGFISDKSGPADVKNIKDLMLAKKGRIMNEEDQKLLTDPILIYDIYAVNTLEGVQLDGFFDLSFNVGRLSELQDCFNKISNDLEIIRRSLSKYAQPNPDAISIVTPMPSPNQIYQSLEQSLKPVIDSGALKLSATIADYICDFVLHMFHKNITAIVYEIWDVNKLVVRSCDNRYFDVYNTWDDIGEEEGWEFPAFDDEH
Ga0209017_100068043	F035590	N/A	MMTMNKKQLILEQIERLLEHHPHNERDIFYLSFDGIVTLSFSVDDNGIVTLEQASVDGQFAIDLNRI
Ga0209017_100068044	F052993	N/A	MISLQQFKAKAFQRVVKKFKLRCYAFSYRDSQWLVAIRGNVVILSPALISISPDINDIRRLGNEKDYELFLALTGLGVKQSLRYQLVATGNFMTLYPRYNHAIFARSNQHVYSTRWRRIALAHAQYLSCRISQPPCMQIAEDIERGKLMIALNYVRLGSFYIFVNGIPIDYAYPFHEQCSPQVYVGERKMLMKDNVVPWLGRLERTQLLPLPTPPPTLEQVLDKSAGFDYNDDHEQEAAYPGTD
Ga0209017_100068045	F043791	AGGAG	MIENVLIAGLATVYFSFVFTAKRGPFDFFVRIRAAARRIPVLGYHLSCPTCLSLSSGALLFALTFTPLAFLVHILAVAGIVLALHGMAGYWHSKDDD
Ga0209017_100068046	F042114	N/A	MDEITRVKTLNEAFNAVQRRVPFLYQHSSWHALYQPLDSQYARLIIANLHRYPQPNEYADAMSEMAIFASHVQPKRFEYNGLKCLQFDLKRVKLQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209017_10006804

Overview

Ecosystem & Geography

Associated Families

Sequences