NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209017_10024748

Scaffold Ga0209017_10024748


Overview

Basic Information
Taxon OID3300026280 Open in IMG/M
Scaffold IDGa0209017_10024748 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1662
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029452Metagenome / Metatranscriptome188Y
F092114Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209017_100247481F092114N/AMRELLSITRHKMEQLLGDNPPKRDTWLIKCRRLREIVSNLPSNQIITTSIPEGHSNLLLINITIKAHAMMQLLRGTVVDFGDDTELYQTEFNKFLAANELALREAILQRLVYGLGAVCVVGDKQHGWRLQSISPTDLWWDCTTGDVMQPKWIARGYRDNDSNDYREVWYADVYHRYKVGSTDVDTHTNPYGVIPIVLFPAQYIPDTIYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFSVKRSSIDETELQRLQNPDEVYVLVNEQDAIMPIPTPAPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKFATEVVAAVAGQTVRIQAEWYNTKVALERLATVYYKLHNPNGTATPRALEDSLTSANQLLRTEMVGNAPSGNIP
Ga0209017_100247482F029452GGGGGMIYEYRCAECGWLTVASRTVEQRDIAPRCERCGKLTKRVFPPRAQIIVPRVFQLECAREAAELVLPQNDAEKQYWDTFGIMDSDGDGE
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