Scaffold Ga0209017_10027037

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209017_10027037

Scaffold Ga0209017_10027037

Overview

Basic Information
Taxon OID	3300026280 Open in IMG/M
Scaffold ID	Ga0209017_10027037 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1551
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003460	Metagenome / Metatranscriptome	485	Y
F004367	Metagenome / Metatranscriptome	441	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209017_100270371	F003460	AGGGGG	MPKASRDERYMHDLQQAYEVLHGVLTSRGLYAEVGMMLLVNMRRPAELRDISVELVIRGRAIGSPVWRVAEGLRVPGRMKLRSVSSVLYGLMLRAAYDIEAQISLPGEDRPQRPGGARP
Ga0209017_100270372	F004367	AGGAGG	MSGSTGANGRDRSDAWIEGLLVGAGASIGRVLDDRQVHAASLALEVFAYLLAALPADRVDVRDVIRMLKFYSKGVNDAKSEQG

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