Scaffold Ga0209863_10000698

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209863_10000698

Scaffold Ga0209863_10000698

Overview

Basic Information
Taxon OID	3300026281 Open in IMG/M
Scaffold ID	Ga0209863_10000698 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15227
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6139	Long. (^o)	-149.3145	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F057564	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209863_1000069816	F000136	GAGG	MAKAKLRILYGEGDAEILKAQAPAIEKAGHTVQQAEGRKAVQEALNKGAFDLVVLGPTLSRNDRHHLPYMVKKTNAATNVLVMHADGSRHPYVDACTDTGASLENVLSRIESMKIEGTAPAAAGAAAGR
Ga0209863_100006986	F057564	N/A	MRVGRQILVFLTLATLPAALHAQAANQTPASSSSKRTKPSVGLAEPIEAGAVTNGAYHTKALGLSCKIPEGWVLRTDEMNAREEEKDQKEEKDKSGSAPPASSEGAKVLLAAFSRPPEAKGEDVNSSILIVAESAAAYPGLKEAAQYFGPLIEVAKAQGFTMEEDPYDIAIGNKTLVRGDFHKDVASRVMRQSTLAMLVHGYAVSITVIGGTDDEVEDLVDGISFSPGAK

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