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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026291 Open in IMG/M |
| Scaffold ID | Ga0209890_10000008 Open in IMG/M |
| Source Dataset Name | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 90572 |
| Total Scaffold Genes | 91 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (58.24%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Alaska, USA | |||||||
| Coordinates | Lat. (o) | 68.6135 | Long. (o) | -149.3144 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005307 | Metagenome / Metatranscriptome | 405 | Y |
| F018212 | Metagenome / Metatranscriptome | 236 | Y |
| F042452 | Metagenome / Metatranscriptome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209890_1000000844 | F042452 | GAGG | MTNLRHSRSSLVVLVSVFLATLITVACNQASNGTKETPVATQQAIQTTRQVYVIFEGPWAFAPDPKDANIVIALAPKTKSHKDLVVQSSDKTLASGIYDLSLPARTGPATGTVDPNILQAKIDPQSVQHVLDNKLERYAIRLPKPEAYVAATRYRSRAGSVYPPDASTEKDYVTSVSLRYSVSTLTGFSLAGAPDIGSFNPLLLQVETPTVNFVIEPAHDPDPADKCNTHPREAFRDLTKLLNLNLFVDFPNDPSECHDKDPQNPRSVKTEITPGSPSWLIRGSAGGLQQQLAAIYFLGIHGGTCKAPIIVAGG |
| Ga0209890_1000000849 | F005307 | GGA | MSGSMDRSLAVRAALKAGVLGVFIGMIPFLGIVLTGALAVFFYRRENGFALPAALGSRLGGAAGVVAFAINALLITIRIFVFHAQQEYTDAILKVAQRFGANTADPDIQASIHNLFTPAGLALTFFFWMIFTVVLSSAGGALASLFLRPRNTRV |
| Ga0209890_1000000878 | F018212 | GGA | MVQESVLSTHFQSQLVHWFWVLDTGNCLLLCCPAMWGASRWTARFLLLVMLAPAYGPLAMAQCAQPEAMHCVRQPMSAQAAQPAMPCHHAMAQSKPPQPESSQGESSDLSFQATNTDDCCQNHCCCGATTSERARPVSSLLSFFSLLIETARPSQSAEFQSCDIFGQDSARAPPRS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |