Scaffold Ga0209890_10000149

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209890_10000149

Scaffold Ga0209890_10000149

Overview

Basic Information
Taxon OID	3300026291 Open in IMG/M
Scaffold ID	Ga0209890_10000149 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	32727
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (81.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6135	Long. (^o)	-149.3144	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F000272	Metagenome / Metatranscriptome	1408	Y
F000634	Metagenome / Metatranscriptome	971	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209890_1000014913	F000634	AGGAGG	VPATAQKSAQKSTIKILYGESDQPTLSAQSAEMTKAGHHVTSVLNRQGVQEALGRDAFDLVILGATLSKDDRHHLPYMVKKSHEGTKVLIMHAGTHHHEVDAAVDSSMSMHLILERIAALLQPVAVS
Ga0209890_100001492	F000065	N/A	MSDISNKPKPKLREAPQPPLSRIGATPDSDRAKKPPLVEPAATDQELNPGDRVEGLGNFGTPTGELGTVEQANDDDAVVKWDDDGRMRLRQPWLKKV
Ga0209890_100001497	F000272	AGGAG	MSQTVAERTTEHIAETARQASCATSAIADSIKDGMGTVRRAAKQGGDVAEEFLNDTTQRIQRHPLLTAATTFAVGVTAGALIGWTMKRR

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