Scaffold Ga0209890_10000277

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209890_10000277

Scaffold Ga0209890_10000277

Overview

Basic Information
Taxon OID	3300026291 Open in IMG/M
Scaffold ID	Ga0209890_10000277 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23561
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (60.87%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6135	Long. (^o)	-149.3144	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001734	Metagenome / Metatranscriptome	644	Y
F003010	Metagenome / Metatranscriptome	513	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209890_1000027713	F003010	GGAG	MAKLVKKAILESVPMLVLLGLLAGAVGGLGIGLIQMRAASSSTSTSK
Ga0209890_1000027716	F001734	N/A	MRSRFPSSWLVAPCALLFVLLCPLVALAQEDAPSLGDLARNLRKNKAQEQTQQQPDPGRPVIDNDNLTQVMEDAKKARPVRQDKTVFSIDPSGNTLKVSSPDVTCSLSFNARASALLIKPVLIEDLPLTELLKLDGPGSIQDEALQLEVFNGTDWDIREITIGLTLERKPGESAEVAARARVIPAAERLGPIAVERRSDVTLLYHLKATAKPFSTTAFHENIGITPGAEEDWRWSIVEAKGIRPSQTPSTPDSLQEPLFAMPSLLLPGLNEPQVAPTAPVVPDKAAQDNPARDKSPSPTPQR

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