NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208277_1056942

Scaffold Ga0208277_1056942


Overview

Basic Information
Taxon OID3300026292 Open in IMG/M
Scaffold IDGa0208277_1056942 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1587
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077259Metagenome / Metatranscriptome117N
F089769Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208277_10569422F089769N/AMTEDKDVWMKYESRIDELINNNKISLDDVAELFDIGHAYNIERKLIPERLSDWMKNQSDKFRSKSTSLYKTLGIDKPTSRPTDGYTMAMVVSDVWAEIFMERPVEEVFVNIGKKYDVDKSIIMQNFMKHWSAGLDYHLVLRMKELSPFEMGLVATLVSPIIEKNKSVSNKLN
Ga0208277_10569423F077259N/AMLVNITSSHMEMRSVNHQYIQQAHGILKANLIPLSNRRLRRLAYFDVYFQNYTQLDLYNRYKKIMNSDASHNQMITLAVVLIIFSALDPEPEAKIII
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