NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1000051

Scaffold Ga0209234_1000051


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1000051 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27945
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000886Metagenome / Metatranscriptome849Y
F007082Metagenome / Metatranscriptome358Y

Sequences

Protein IDFamilyRBSSequence
Ga0209234_100005116F000886AGGMRKVYYNPMRKLTLILPFVAVSLLAAKQGATQQPSLLKTTSLESHEGMTITARPWTDPALYKEKFPKKSPVAAGIIAVQVVFRNDSDDSMKVNLERIRLNLILSEEEHQALYPLSPEEAADVITHPSTKNVTSKRLPIPLGGPKSGRDKKWTEVEQSIRDAGVQASVVAPHGTVQGLLYFNLRSQFELLNSAHLYVPEIVALEKNRSLMYFEIDLSRSAEP
Ga0209234_100005122F007082GAGMKNLCHLPRSSAGFLLFGIFTILALAGCKQNGHTSDPRLRQIDEMLDSQLPSGTARSRVTFYLNSQNFPVEDTRDPHAIVAIVHHVDTDTLQPTTARVTFHFDTGNNLKSYELVTAAGAVPQP
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