NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1000390

Scaffold Ga0209234_1000390


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1000390 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14920
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001162Metagenome761Y
F036626Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0209234_100039012F036626AGGAGGVDQERLLKRVWLVNGLLLAVLFGALGIWLVVELGSSWFHGHSAVIPATHGAPVERTSRAVRYDPPQSIWKSTTRIVLITYGEAFERPAHEFASSNSYGERYALYVNAIFLEPGGGPGHLLLDRPALIRSVNFPRSKDDSLQAWITYEIAFEDTDGDGGLDENDAASLYVSDLHGGSFRRVLPEGWSILAHEPLDGRRIVVLALRSAERGDRRSLEETPERAFFYDVQTGRAEPYAALDSLTARAARIVGR
Ga0209234_100039019F001162GGCGGMSAWVGVSAAPQAPNYRVTYHLRVVERRAGETRLLASAAVSGPPETDMRLALRAGATELQGLLGTLPEPDTVNLAGLFFSRRQVGRSRRGLPLWEEDSYRRWSRVPWGGTTVLYPFGPPGVGQRRVVWVEITVSRAFAAGETRASEEATIIDSAVAFSAQAVIPPRRVTVRMWLVRGDTASSRQVVDLVPETTGRRVSFRLGSEKLDFDVALERPEPPRTGRDSALAVAVDVVCLRVVPPESAEAARVRCGRLDDIARRVALVSGDTLMATFGWPPAR
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