Scaffold Ga0209234

Basic Information
Taxon OID	3300026295 Open in IMG/M
Scaffold ID	Ga0209234_1001569 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209234_1001569 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8594
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8594

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001093	Metagenome / Metatranscriptome	780	Y
F003181	Metagenome / Metatranscriptome	502	Y
F023306	Metagenome	210	N
F025944	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209234_100156910	F001093	AGGA	MASQTKGRESWTEENSPRTTIRESSPLKLSRVFRFVDPQTGASQISDFPDSNPSGDTPLEVRMKHFTEIENFTFLGYTLSHELGGTTPSPIRTVTDLQVPDEEFQNFINEAKSATLTDEELADTVLDVGINWEHFVASNDNLLIPEHPLKITDVLMQEKIDSLDIITEAFVREVNLRSIEKKTGTKSRAS
Ga0209234_10015692	F023306	N/A	MKSDGHAPNTFPVGGFLRTLPFWLGAVIVSFVPTKILSTIEYVLVPSQGVGSLILDEALVLSLVMLYFVYGMRYITRRIDRLSEYAQGMSPENTELRLRTPPYRLSGVLIVWIILFVVINLVSPIPLNFEGVVSNHVLVFAYFFLILSFFLWTYGSSMLAIYRAGKLPYQLKPFTEDRTLGLKPFGTVSMRLVSVYTIFPIIVTFLQLITINVEVPGGVTVGLGSFRASDLIILGGLILVGVILFLIPLLGIHRRLQEARRQELSWITTRYTNLVQRLKDRITRSDQFENANEKDALASEISIVRQIQSDIHRIQTWPFDLGVITRLATVLVLPPILGVAARIMILIFLRI
Ga0209234_10015698	F003181	N/A	MKLDPGPTGELRVLDSGYTDQVLLDTISEEVLRIKATVCNSLQDLNRLYMVDRALYTNTPGIPLYMEFTPQNMKSIRTPLIISEVKLYTVERVWGMRTLRITT
Ga0209234_10015699	F025944	GAG	MRMSLSTTEQSNHSYRAIPGYLKIIILAQAATILSLTVWMYQEYLNDAYFQQYVISLLQTNIIADALLSMVTMSVFALGTFTLMGSMRSGRGESKEWRLLSDEAKAPSIPSLPVVDTVERATRPRSKSRRPRARKPRADMDKLLDSMRYFADDHREE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209234_1001569

Overview

Ecosystem & Geography

Associated Families

Sequences