NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1002022

Scaffold Ga0209234_1002022


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1002022 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7728
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005666Metagenome / Metatranscriptome393Y
F034694Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0209234_10020224F005666GGAGMKALSLRILLPTAALLCVSGSNPAHAQAPLEPAQMSPRTAFYWVWHGVPGPEARKANSLLALWDDPDFAPVRSAIASNLIGSPAEKSPKEKLTAEEFQEFAALLENSFTLGYLSEPAKRTVSNGGAAADSKSPAWNGMFFVYDRTGKEALLAKAILRFRAVGKEAPLLSQVTIGSVQVLRAAGKNGVSYWAEHGKYAVSAGERSVMEEILGRLDGKVSGAASLAQSAAYQEAQANLGSGLLEFFLHIPELENLATDSKAGNFQVRPLLDAARLDAVHSVSGHITFEGAKTHVQAAILGEAAPGTPFDIWAAGQPSPASLSFVPGDAVSYTSGQLNFPGIYDTVKRVARAAFPQVQQGNADLLDTLAQTRFGMPVPEALGLLTGEFASMQTSASMDSTKQVYFLGIRKKPETLKLIRTVFSEQVTSEHNEGDVTFLKISLGGKQGIAGVTQWNLFNLAVTQDMILGANRTESIRGVLSNRAHASTAAGLATVPQFQAGRPKFPENLNGLSYFDFQKVDWQGLKDRWIEETKKGPVAKTVSSSKNTVPSTALDWLAQIDPQVFARHLHYTSSVSWKDSKGIHWDQWVE
Ga0209234_10020228F034694N/AVLDYLFSLAGILPWRCASCELRFHARLLPLRTFFYAHCGICGNLELQRISAEHVPGVTSIPGRILGLPALRCAPCRHKFFSMRPLRREERPVAAAHGE

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