NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1012912

Scaffold Ga0209234_1012912


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1012912 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3173
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043335Metagenome156Y
F052498Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209234_10129122F052498GAGGVLKNKMLAVIVIVVAAALGGGILTFAVGLPGSPCEGITGTTRNFTIVADINGFNDSKDHQGQWPIMSVHRCDIVKVTIINADTQTHGFAIDNYAIRGTEIQGGQTLSVPPFLASKIGQFRVFCISFCTVHTFMQNGLLNVG
Ga0209234_10129124F043335N/AYVKAHFASNQDTGENINTQIIPEADTGSTNALIVGINPTNVIGDWYTSDGFLRSNDAQYTMIAGDSLVGNIVQMPFNLSQVSALGYRYDVKSALVDPLNAGRVLYAPVQTLQKSLGLNGFNVLLLEVNSDPTVLSAVSQLASSFGLAVGSQDPILNSNLTFLNGIWSHIFLVPIITLALTCGILLSYLATNFSRRFNDYVILKVLGANAWYRLSLLTWEAWGVLAISMLIAIPLAWGISIFFLVPDPNLSLGDLELSTLVSLSALSVVSLASATIYSRRLGLTTVKDLKP
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Institute for Fundamental Biomedical Research
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