NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1070417

Scaffold Ga0209234_1070417


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1070417 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1330
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004922Metagenome / Metatranscriptome418Y
F005811Metagenome / Metatranscriptome389N

Sequences

Protein IDFamilyRBSSequence
Ga0209234_10704172F004922GAGMCVTPVVKCWHCGEWFVKKSNRDSFEACPSCGKGFEQLSPEAQRAVKATLAPFFEVPRLKAEQIAA
Ga0209234_10704173F005811GGAGGMIRPENRRSWVPRTAELTLAAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIPALATVFVGSLGMALGQPSFYQVFGFPGLLIPLVAVGAGSIAFHYRLGPIVPWVYVLAGAVFYVELSKGGTFFWLYPYLLVIMSLPLAFRLKNNPRMGLLTFYIAMTEQVTLNILSISILSLTGPVWSVITPLMYVERTIATLGGAAGIVALKSGLGGRLDLMDQSPREVRQ
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