NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000013

Scaffold Ga0209235_1000013


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000013 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60883
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (75.00%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002941Metagenome / Metatranscriptome518Y
F002975Metagenome / Metatranscriptome516Y
F003037Metagenome / Metatranscriptome511Y
F005263Metagenome / Metatranscriptome406Y
F005627Metagenome / Metatranscriptome394Y
F005700Metagenome / Metatranscriptome392N
F007915Metagenome / Metatranscriptome342Y
F023823Metagenome208N
F030030Metagenome / Metatranscriptome186Y
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y
F073400Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100001311F005627GAGVVFAMQSPIRRYLPHLLVGLTISLIMVGAYLAVGFASLTAPKALWSVNPVTIAFSGSAGIGSSGSVGEVVKCAPKVENVVFHTAVSNPTKLSLSVSPGGEATCGPAPDPVTVTASCLVAAPNCKGTYTGTVTILEGYTTIPPSLSVTIVVT
Ga0209235_100001316F073400GAGGMRRDQLRRFLNSEVVGQLSNGLFFEGYVVDQAGRALVFDRDGRAPHQISATRVKWLAKAVRYC
Ga0209235_100001317F023823GGGGGLEPAEALVLLSLRYVSGSKCWCLIELGDETKSAFDNALVDSVSAALDALGPTVKESIFLLLQRRNSISPDGIPKLVGEFAKALQDVLGPTARVVEKLIIAGLIARKQVPANIAQGRSLLEVVGSIRLSQISQS
Ga0209235_100001327F002975GGAGLADFCSRCGKTLSLIDPLLELKGLRFCEDCYPDVKREHAAASMSDKMDRRQRVVFADDSSDENLRGSIIKGKQALAVKENEFKWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPATVKSK
Ga0209235_100001328F030030AGGAGMAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQLPRENHSNLIQSSIYGGDSRNSRMLVSPVARLRQ
Ga0209235_100001329F042845AGGAGMDTRKWKAFLRMNGETTVDTSQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQTEQSRTLALEQTPRRRGRGQVGD
Ga0209235_100001330F046962GGAMEEIANSGYPPETTSRTVLQDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGSHREWMKGREVYFKVEGKVDGQNCLDEAAPRSI
Ga0209235_100001335F005263N/ALERRARRIFTIDHDVSEKIDELAGGHTLEVNVLVNKAIRRYVEWGRYVDTFKLVTSDPRLMKILWSHITIEEAREKGTQNGKDTVVEFILYYFHKFDLDSVLKIFQLIGAEYANAYVYSEFGDKDSRTIILRHSMGRSASAYYGASFKALCDRLGVKVELEESEDQLICKIGPASTLRTIVPKSFKEQLAKQSIERTVGS
Ga0209235_100001338F005700GGALTYRTEYTLGFLALLPLLATGVAKGTGWLVTVVVVYVGVPLLIWSLLVDRLALLVLRIICQLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTEVTPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDRAIALGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAMTMARLFPQVSGPSLPASSAPTLRSVRVNEDTKQTAQPHS
Ga0209235_100001339F007915GAGMSLAEAAKPALPSSTLRSYAMIGIVLYAFGLVLNEIGNGLAQLWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGIFYVSEPDQTYAVSGLKIGSYTHYVGLGLIGFTMILLIALAFYLTRAKSAHRALPKQDPGSTS
Ga0209235_100001341F003037GAGLWVEFKCPMCGKDLDDDKAMANFLVCGDSSHGLLRFFTGDGCYFTTDERVAEELMKKGKRVHVVDPKEFFGNQTINLE
Ga0209235_100001361F002941GAGLNEAAVPGQMSVKALPMLVPESVLQQNAEKKRVKKGILGGSEERFVFGKTLYLPYLEFTYQYSTEKGFRSKQSVLGQGRSVVMALREVNLGFYPELVSVVPQLVDMEPDLGSMVQGVDSTVLVSERLDELRKTLSDYDYQLQELSKQHDSLTKTDSARQEIKENIDHLKKTRETRWKMFADGLKLPSKIDLEKFEFLEGELFYMPYFLARFSRGGESRFLVWDREGKENDTIAEELMKNSKFRDLVQSHITK
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