Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1000024 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1000024 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52702
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (70.31%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

52702

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (70.31%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F006617	Metagenome / Metatranscriptome	368	N
F021077	Metagenome / Metatranscriptome	220	Y
F031371	Metagenome	182	Y
F097057	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100002415	F031371	AGG	LSKGFGKWVYRLTLARWYYNYAWGWVIGYFLSTFSMIVTIYYLIPGLRDLFSFPIFLAGSGILLVGGGWVLGKILVKRFKIQPIENYISSEVNPFTNAALTAKERVYWNAMVVLLKKEHARPPDAEVAKCVEQMNMYIKGKVPFNFDELDNFELGEESEPQGPLTKDAAKWSPPGDIKEGGDTPI
Ga0209235_100002416	F021077	N/A	MMVYLIRTAVPKLKFNKEYLQRLTKPIPKKEPGMKEATTAEVQAQPRHPTGFLQYCMNCGKNQTFRVDALGWKTCTVCHGTAPDRSQSPI
Ga0209235_100002421	F006617	AGGAG	MLLWYVWIRLVDGAWHRLDDISKQLHLPKNAVEWAAKFLCDKGMAESGFEEGEIRLHQGGARFEDAVKTLLSSAKPPR
Ga0209235_100002441	F001571	GAG	MISQVRQGPERVPERRLALVHRVIVPDKEYPKEYAILVTDRRSVFIRQRKTRRSFVLRYEMRIGTALVTDAIPKTLDDFEQTSPESLMADDSNLTVPHEAVISLAMRTEEHERRKRDLFLWLTMRRQGEVFQVYNFEMKYRLDPDRDAMIKFYMVPLGAYFKPRRQTQSRETILREYAADALEIFQRVLPPDCIFVAG
Ga0209235_100002443	F097057	GAGG	LVDISDPVVWSTVAQTIVLTLTLVIFILSFRSQNNATREAAYQRALDDYTDSMKMLVENPQLSKLPMEMARANMPTRAELQSQPPESMVVRNYMLLLYGIFERIHLLYRKKWIDSDTWNQWSLFLEAVTRHPAFRDVHRTSEGMFDKPFQDYVSNILSRKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1000024

Overview

Ecosystem & Geography

Associated Families

Sequences