NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000039

Scaffold Ga0209235_1000039


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000039 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46955
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (71.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F011288Metagenome292N
F023817Metagenome208N
F024519Metagenome205N
F077055Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100003910F023817GAGMALTSMANTVQKQNASIEDRVFKLKLEWMMAKDDNERRRISEEIRQLIQSTPSK
Ga0209235_100003921F077055N/AMATAKNELLLLRTFRLALPAALFATLLWSLEFSDSTRQWVYNGLGANANNIVFIIGLVLVVGLYWFMGVYERKILYENRHTRPAF
Ga0209235_10000393F011288N/AMKSLIAAVQHLPPREPSAAVEHLNLNLNEDPWLGTLEHFPTIYHARASWLYDINTESLQKAILAGLRSLSQEKKSLEITVADIPGYQSGGVVFEFGVGNKDGFDILDEKEVKRLIQRIEEKGTFRTLDLVFHLHYSVDDGRRHKVHQDQYVARLSFQPGRVELLLHHLKGVRRIAPDELVRILLSASNRELNRNKYPELELESLTST
Ga0209235_100003931F002368N/ALVEKTAIQLTPTKIKGSKYLLIPKDLARLLEIEDKSVLNLTIEESETGQRLVYSISQRNHHPAENKNPEKS
Ga0209235_100003940F024519GGALTQSVKPLFIKQSAYLRVPKDVAELLDIMGAPTGAVELRIDERGCALVYTFAKQSRAITEEPEPVEVLVAAQ
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