 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026296 Open in IMG/M |
| Scaffold ID | Ga0209235_1000113 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35252 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (91.43%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006236 | Metagenome | 378 | Y |
| F015708 | Metagenome | 252 | Y |
| F015984 | Metagenome | 250 | N |
| F022381 | Metagenome | 214 | N |
| F043305 | Metagenome | 156 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209235_100011314 | F043305 | AGG | MSIPVYLDLVAMVAPALSIWLLLRQKQSFVGIARHNLIRLNIYFFLILAADIDRILSQSIIATYVMLVGFSLIAMNFGHAAAVVQFCPEARTLGESLKIIFKKTILFPLYLLILGIWLAVTLTFEPVTSSLTMYGNEAYVLPAFPIWYIALTVAVAAPIVLYPSLLLLSSLNRAQTSYTRNSLLLMLSSWLCFPTVGLVVFFLLSPVIPFSYELGLIISSALYCLLAVSIRTLPGTTRFLKSSLFPQSLIKFGKRYLVLHDTSTRSISFLSSAFRSTIEAGAKVVLRSPATWLVEGLSRNDSRFKEWTENGKFVTSSTSSDDRRSGKEGLSDKFGLSQTATVFVKELERQDLQGAMISIKTESRNEPEAEVLLLESSQAPRPQVADFLQKNGDVELVNLSEASDPFSALVNLDHAKIEGSKILLEYSSNSNFEDLVRKFFDEGIANAEMCTLFTSKSSKLYRALKGKRMVRMVAASSMVSAPDESPDGEIQIPDKELGLVTSLMTDLFENNRSVALSFVFDSITELIRGERWEQVYSGIKQLIELLSPSTVTAIFLVNKETTEERFLGALRGLFSVQMSLDDTEGQALRVVKAEF |
| Ga0209235_100011318 | F015708 | AGG | LLRHRSSPVSDRDPLFPGLRYNLYKSRVCLLPSCRRAWRKEMSHSRTVQRSVTPDSVKALMIIEAIIIAFFSFWLANEYVYNVYFRVYVNSVFVEHFTTYTIALGLGIGLAGTAAAAALYKNLREAKVKLESVTPRIRGSIEKMLANVPSIEGKPAVPSISPVSSSQSAPEAPGAALVSVPTASTPPAPEEKK |
| Ga0209235_100011325 | F015984 | GGA | MGFLSVMGKITIGIAIIAPVVALYFAMTSSDALGLTGVVGLLAGSGIFCISGLYAGLLGIKVEKLSARLDPVSRQRPRTKAKNLIKAECPIDHREGVFVHVSPFRSDAVPDGLDLFLGSCGHEVHRGEIEAEA |
| Ga0209235_10001134 | F022381 | N/A | LDPTILVVSIIGITLTMGLIYYSLRTLFLFKRNVAARAWVYICLSAIFSSMGVVAFLIESLTPIGLLPIGGVLETVGASFLLLGLRKNFLFWASKDHFA |
| Ga0209235_10001136 | F006236 | AGGA | LKIPPGTGLLFAGSGLYWVLSGPLIGWFSVLNPTQIHLSQMGLTLVLITGIACLVVGLWIIPTDFQELCNLFSRNDGWMFTIPIVLVVADIYLTLLGLSVGNWELNPFVASAVQIGSWAVVPFVVSYMALSVGLGLGMLSVGKWLFGIVRPSRFIPFAITCGAASFGPLSNAELLALPRVGPGVSLIGTIVEVVALSAGIYAHFRKFELGRSSLT |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |