NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000134

Scaffold Ga0209235_1000134


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000134 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33261
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (75.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002993Metagenome / Metatranscriptome514N
F014244Metagenome / Metatranscriptome264N
F095270Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10001341F095270N/AELVLDYSSFSFEVEVSEILFEGKGRIVQDKLDHIFELFRRKYGPEQVERWYGASRSKRRAVEIELGRVLGKRPSSRNQLLEIAI
Ga0209235_10001342F002993N/AMAYGLAEGFRKTVVRLGGKKKNRAVVIATFGNHFSMNDALERFRKEGLQFETEKGHIVKIYLDKNTKERAEQVRSIIREHLGYVEPL
Ga0209235_10001345F014244AGGVAFGEQTFTLLSEEARARGITIQELLRAVVIPDWFKAKYEPIPRHNPISERRVREEEPVPPNSLSNKLRY
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