Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1000193 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1000193 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28995
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (55.56%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28995

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (55.56%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011480	Metagenome	290	Y
F016793	Metagenome / Metatranscriptome	244	Y
F020149	Metagenome	225	N
F024084	Metagenome	207	N
F031443	Metagenome	182	N
F063566	Metagenome	129	Y
F074651	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100019311	F074651	N/A	MPVSRTRGTKDSVKFMQVLDRAVYLRLKQLAHQRGVTVQELIRVLLIPDWLHGAEEKRLRVELESRHRRATQKRLFRTSLQKPLVSARKN
Ga0209235_100019313	F011480	GAG	MQLQFDQKVDSAITRSVRATLRFYNELRKQAAARGEPGRPPSFETFSTMAAGLMDASKQVDLDRLKNLSMRELFERTWAQKLLNYSTKRSLKDAYETLTKRF
Ga0209235_100019316	F020149	N/A	VFLASASGVLPRNTQVGLLTLALSATLSIVISLVGIPIGFTYMYFFGGVVSTKAIKLYLFITKGTHVIESKTSELSALQASRGLKLKLRRQIMYFVFILAVVVPFASYEAKHKDIPFFSPLARTTDIVSLITQDFVTLTMTASLMLPLVALALPYLGGLRLRSIDVGPFHTTVLSMVIGASGGFSLLYTALTRPVLSVLAYVFLLLIGVCWCFAIGCNLGADPANRHIAHIVLAEKVSSRVVSSKIWLENPPGKFREV
Ga0209235_100019319	F024084	AGGA	MQLQDKINEDLLKASLPEIRIDGFRLPDQALEITFERETVTGENRDRLWEIINGHYKKLLRDLELKE
Ga0209235_100019320	F063566	GAGG	VVRVIGRSWSSIPGFARIILVIQAIAIAVLSGWLYNEYVNNQYLQVYMLSLFQGRGSFLAVIGFGGLVGTALVGILLKAGNILGEIEHLSEKVGNGTDTNTATVSRSAQMPVLKVANREPRSEIGQLHGSLRRWKERSD
Ga0209235_100019331	F031443	N/A	MSDTKASKDWAPFSKQIKLDESDWAVVDALFEEHRNREGVISKADFIRKLLLTGARSQLLYLHQHSPASLTRVARTSGTN
Ga0209235_10001936	F016793	N/A	MTSKARKNKPTRIEKVLPLEKIIEFLRQRFHDPYLNPEAEVSFADFLAAFPEIPREDLEEGLSHWVMRPGAKVLSTKTTDLDGYELQVWYVHGLHEEHAELEDSFSRGALQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1000193

Overview

Ecosystem & Geography

Associated Families

Sequences