NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000415

Scaffold Ga0209235_1000415


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000415 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21184
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013745Metagenome268Y
F021950Metagenome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100041519F021950GGAGMDHCAVCGMKIIDANTALCANHFQAYRKVKDAHSIWFVAYGNLTIEDFLRRLVALPETGDRAKEIAQFLIHNPERWE
Ga0209235_10004153F013745GGAGLGSDSRSPKARHRFGFSGPLTRQKKDKVTTDDILESLTRQAELRQKLGERDTVRLEEIAETEDLSRFQGFNPEPVSIPEMANRSLGHLVFVIMLLCGLTVVWLYSSISKPFDLASLNEIIQKSDLQSIFANQAQLGIIAIAAFVGALWIRHRKRSSNLQLMPG
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