NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209235_1000476

Scaffold Ga0209235_1000476


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000476 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20161
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (51.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002633Metagenome / Metatranscriptome541Y
F020669Metagenome / Metatranscriptome222Y
F103032Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100047610F002633AGTAGGLSPVKPETGPKRVPVADRLALLLDVFSPWDGISLSYRQFAAALGGAVTEAAIKKWPHREKFPADVARLIVTKAKELGIPDVTLEWVLWGDGSGPQKGTKKVPQQAQQHEHQELAMSIAEALRTDLAHNEFGQWSSVEVQRTVIWSLKDLARRLWVLRFPMSETFKLTDEWGTRIGLPSRSLASAPGPDDFSAVPPATPQGR
Ga0209235_100047619F103032GAGGMRPLIIVAMLGSWASLPALGQQTRAPLRIGTHVAGNMMNGPFDMYRVGGQLVIPIGPRLAVYPVVSRFLDGPEWELSAALRYRPFGAREGSSPLYLGVGFAGINWGHEGRGYDLLITGLELPIGRLRPYAELQFLGPVFKLVNPQQDWGVQAYSGLTWALR
Ga0209235_100047620F020669N/ALSTAREDLVRAISAARDQAKKLLTALEQQHHPETSRSSSLYLALVSIRKRLTKDEQSPSAVVAELEQLVTLCEGKLARIKPDLEDALKIARGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.