NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000528

Scaffold Ga0209235_1000528


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000528 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19530
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F006078Metagenome382Y
F007215Metagenome / Metatranscriptome355Y
F009323Metagenome / Metatranscriptome319Y
F013994Metagenome / Metatranscriptome266N
F016382Metagenome / Metatranscriptome247Y
F024995Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100052814F007215AGGMRRKHIAILVIGVIVIVGVVWYQSLPRQQNGWTTYSVEYVLTKNGNHTQIQASYNNGAVNTEQVYWLNFDNRTAVYNYFRCTPSMTGCTADGCPFTVLNDSVSEYRVKIVCKAGV
Ga0209235_100052815F001093N/AMASDTKNRESWDEQESSARSISQSIPLKLSRVFRFNDPQTGAPQISDFPDTNPTGDTPLEIRMKHFTEIENFTFLAHVLGHELGGTTPRPIRTVTDLQVPDEEFQNFVNTAKTASVTDEELADSTLDVGINWEHFVASNDNLLLPDHPLKISDVLMQEKIDSLDVITEAFVREINLRGIEKQTGTKPRK
Ga0209235_100052822F006078GAGMARYMQARKTTVGAVTLLEPEVKVASQSVFYALRTRDGTCASGCGVSQTRVAEIVFGVEIVEWDLCSACLSRTGFLEYFNSLPSATPREAEEIKILLGISNERFETGARTHATIVGDTTAEANSGR
Ga0209235_100052823F013994N/AMQPVQPYYQYQYPQNAWEVARTNKINNSLTGLLLLVIGVLISWIPFAGAIGGIVGFIGAILVLVGREPFGEGHVRNTTLALILFIVGITVTIFGFFYALVYGVSSAITGGSSSSILTLFSIIFVIGGAIFGLSEVLLTYSLQKGPGRTLLWTAYAISIALSLVNLFILPFSSGGFWTIYFGTGVFLFTGFLAAIPAAIYGTAFYLARERIVKHEIPPPLTQPSTGKPPW
Ga0209235_10005283F016382AGGAGGLRSSLVDIFYESLGYCFGRVLVETLGPTVQASVYDLLGRSGIKREEISNRFDDVVQALTKTLGASSRVIVHRTVVEMFKEYSQRLDFSYTDSLRDRLALLKETVVANHVLPHRLRDETTFDTVEKPSWIDAPKGQAYGSLYPMKKGVKT
Ga0209235_10005284F024995AGGAMASRVRESGWNNSLDNFESVSKSLSPDQRFAAEKEFSVVLVSTVREAVGNALGRNVLEILTSKGLLDDASNSKEFDRKLELLFGNGAAVLERIVVKDLNRKLGIRYDSEASFDYEKSLETARETCFMESRLK
Ga0209235_10005287F009323AGTAGGMVDVVVISTLYFISVFQLILQAGVVFYAYRVTKLTGSFRAWTLIIAAFTLLTIRNVVSLVLSLSLPADQLTALINSVGEVTLILSSAVNIAAGVALFLGMFGLVKRFENQSKGPQ
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