NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000561

Scaffold Ga0209235_1000561


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000561 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18974
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006340Metagenome / Metatranscriptome375Y
F006839Metagenome / Metatranscriptome363Y
F007853Metagenome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100056122F007853AGGALSKSSPAEQEFLESKLEKALDDAWSKVNIALDKTTKSSADVAMGIWFAAEALEYSSLLFNLTYALEDVKAVVKLRKGEAPLVLVKDSMELLKQVREGRHGSTTDAYVNLRTAADYLKVAHLDQVKKSTKKRG
Ga0209235_100056124F006340N/ATSRYVALVAVLTALFTAYGYVSSIELRAVTRSLDLFFLLPAFFAILVSLTGKKWGGTILGTIIGLIFLGTPSAAGNFSPHITASVVVNGLVFDLYLQRSDSSLLDPSRKHLVVAGTLGNLAMAPAGLLVLQAVFGPSPAVIWAIALIGDTLVGSAGAFFGTLVVERVKGVQARRVLEAKSAVRVRV
Ga0209235_10005615F006839N/AVNPLAPSKEVVEVTEVDTDALPFLEEACYYLRKKGLSFQEVSKALEIPEPQASQLFEVYQSKMAKGLVEESEVDRNLWEDVYNDSVGNEKITFARENGFYHCRRSDLDSMDSAALMNIFETSKKFLDFDMYRRYLDTKPPVGYDPMAMQRQIKRAVELIQEILRQRYEKEADH
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