Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1000842 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1000842 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16211
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

16211

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (41.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013998	Metagenome / Metatranscriptome	266	N
F016384	Metagenome / Metatranscriptome	247	N
F019978	Metagenome	226	N
F055614	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100084211	F016384	N/A	VLWEHFAYFPPRSTLKGWRSLPAQDPLVSPVDVGVLHQVNMSLTRNLDFCQSGEGSKAWSEVLGLREDFKSHLAWVMGLGHLSETFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKEASFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVSAASTMYTSRDVPELLRLTSAVKRFRELLSKTMSQWSSKLEKKDSPPSTKGS
Ga0209235_10008424	F055614	N/A	VSSVDDVSFEDRFSDQARKKALEMFEHQPQPAAEEFDFGELFTRILWEKDWTDKVESVVVKIRNRFHIGNTDTRLSNELKRLIPDMKEVAKAYDEMTTGYREFIQTVLDAKQSRSSQTGKNIESGKNAKLPKHPVHLK
Ga0209235_10008425	F019978	AGG	MSEKKRVPPWERAQLNFTLAERRRLRKVEENERPGKTRLLDLEENRKRLAEIRKHFCPDCQRYIRSDQLAKEEWKIGEEQGFCKCAKNNPKT
Ga0209235_10008426	F013998	GGA	MRLKIPLKMHRLLSLLAFVLALIGGVLVVVSALGGLGHPSISSLAINGLVFLFGLDAILGGWMIYTGIRKLGGIMTLFAGIILFVLTGGAGTSVLLVLAAGVLGLVAAELKPWWAFWR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1000842

Overview

Ecosystem & Geography

Associated Families

Sequences