NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1001133

Scaffold Ga0209235_1001133


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1001133 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14220
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010906Metagenome297N
F012492Metagenome / Metatranscriptome280Y
F060788Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100113314F010906N/ALPRGWVTIRVREIFVSQQQDLSNLKSLVGAENVLAECAGVNYTVYVTDSRLLVGKRFAIGEKYVNVPHAEVSMLELITKSLIPPLTFAVLGAIAVFLVWWFPGQARLSLPQAPFDLLLIGTFAVFLAAVVATWWRRRVAVLRIGISGTKEPITVRLVPASKAESVFKALKG
Ga0209235_10011335F012492GAGLGVEGEEAQPRKSNSRRYIENLLGWPSEESTGFGVYRTALFTSLFEYFIVLFFGTWLIVEYFYNVYEQQYFGSFDPVFLVAVLMAASAYGFMRIVSTVRTGLRPTRMTKKNEDDY
Ga0209235_10011338F060788AGGAGLGLGGQGVLLGTSWAISMGIGIYAISVFLVKYVLHYGPTELKGPNKHITLGIGSYIIWFLFTTILLNTIIYPGPY
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