NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1001217

Scaffold Ga0209235_1001217


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1001217 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13811
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008609Metagenome / Metatranscriptome330Y
F010607Metagenome / Metatranscriptome301N
F015844Metagenome / Metatranscriptome251N
F023559Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100121710F015844GAGMTETMYRHAMSTAFKNWHSLALAAVLYAVNVFLLSIGNDMISKSNQSLGGWVVLVVSGYLFIGAVYLVSATLTENSTLSESFPGIIDHFRTFIVGALAYAIGYFLLFNVAPPLQSTQALAAAVTLIVGGAIYLVAILVGVAAAFVRPRK
Ga0209235_100121711F023559GGALKKRIPKPDLSKYDPSPLYMYTEKDSLNRVTVLKETAKEIYLIAGRYSGVEGDARVYAPLTDEEKGEIERNLRGSHKDALINHL
Ga0209235_100121713F010607GAGGMVKIDRYRVAARFARLFPDPAVFEDQDRLVERYLVKNGLPKDKASYLYQPEDEVNPVDDSGKPAIASGAASFRFQGKNIMAEFMPNASLTVEYYDFGTGLSPEDHSKLWKRQRIGEMSFQLRDFRHETSGLNLTNVPELYEMMKKQSQATSLSSIELAKMPEDAFRVTVAYLKSQLRKSAEQEGLEVEVYAARELSASEKSSLEKRLTRESTGSTVYVILSKPSDLMKIETH
Ga0209235_10012179F008609N/AVGLTLLALGIAGYLVTSQTDLIGGRTHNIYPLGSIGLVVLGALIAVGGVMMSQAGAKSASQLKCDKCGMTFGSKAALDQHSKDKHGMKAA
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