NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1001469

Scaffold Ga0209235_1001469


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1001469 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12782
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001912Metagenome / Metatranscriptome618Y
F024521Metagenome / Metatranscriptome205N
F037119Metagenome168N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10014691F037119GAGGLELRCVKCAVKFERSFEERRRQLNYSEGEMLQLDENTCPNHCGGGWFAIEKQHPIRKFKRRFGQDD
Ga0209235_100146914F001912AGGCGGMTSSRWHEGSDSNHETGLNLGNTLVGHRKILAWQSAKLPRYRREGAVEVRPFPAKKRLLVSEAQGLSSEAEKRNPPTTVIPGVDESKP
Ga0209235_10014692F024521GGALKKTTRKSPQLLNGFPHIPFDEFPLKRSEDLVVMLEKNMPEGAKVEVTPMEDSHHSPCMEEMIAIMVHDIEEGKDSSEIYSIYQFCPACHIGVRVL
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