NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1004482

Scaffold Ga0209235_1004482


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1004482 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7810
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044399Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10044827F044399N/ALQSLTPRIILRGVLLTFFPWAPAYLFERADFWFGQTNNGYWYYQFSSTRLEAFVISFALGGILVAYLLRPRWAVIQVLLSTSLIYVLFYFACPTYMVGPVWKSECYSFGPDGLAGVRLGTMMFSFGALPAIVRASYKEDKLNKRLRPWIAIFGAFITSVVTTWFPLTAWFSGVTYLAPLVPFQAALLFGVSEMAVGIQAAKISRSILVATASGFASALLLSGFLWPLLCPSCNRSLLFLTVPSWGFFALIGGIMELGLPRKLSVGPLRHFNPRLEDIRRVGIAVVLLLSLWTLVSFDLWDPSVLYATSISPSPGQLTLGAPTYPYVAGYYNSTQYRICCVQIGVSFTKVDLKALAPNNFLMAGMGVQSPNCCIDGWDFGWRADLFVLPNGTRVVSGSTWETCDGNANCGGIFWEHLRYHAQQIISPTNTSTPVYLRMMWQYDQPSWHADWYYNYTGQPWTKFGSFVPDFREGHYFDIGVVGVGNYPWAFAFFYQFGVASKTPVPGWSAQLLYPSFVHPDGSWRLMERANIIQGWHSYWKANYRWGGQPYNGVSALANSNDETIPLGILQLSYVGTGVLQDKTVLW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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