NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1004688

Scaffold Ga0209235_1004688


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1004688 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7648
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011834Metagenome286Y
F026533Metagenome / Metatranscriptome197N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10046886F011834AGGCGGVVESDFYRVRLRFKRLFADPAIFEDPKNAVRRFLKFPHLASNQIAIYQITDDISPSDNVGKSPDIAGTARYIHRGRVVRSEYLENANVTLEYADFGSGLSPTDHQRLWKRQKWGRMNYDLEEFHHEHLKIEIPAVPELYEMLRARADPTALVDVELPELPDNFFRSAVSYLETRLKQLAELEHKTIDVYVARDLLAEEKAALEKRLTRPSTQSTIYIMLSKGEGTAQL
Ga0209235_10046888F026533N/AMPVEKKHLSMKDVQKFDPNPLYLYTAKDALNRVTVLKEANRDAYLIAGRYSGNDNENRLYTPLNEEESKEIEKLVRIGRKDATISFL
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