NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1006146

Scaffold Ga0209235_1006146


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1006146 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6725
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041660Metagenome159Y
F050245Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10061461F050245GAGMSLNSFPNPVNQTLYFNNDEHEVPFTYSIRGRRYEQKPFEERFKLKLSDKWIFEVKNTRSEHGRFIRHKRRNEMLPLREILSRVKRMSRLGQVRIPHKLGLYAAASYSRNHFLESDRGLRVTMDEDVRYFTFEGLAGTMLGASNRAIVELKIPPGRTSSPLVRKIHGLLRKEEAEQGISKKATIFNLIEDRARRLGEAYKEPSHNTEIKAKVALDSEDQDIFPKIRSDLSESKIEGFRLSNSYPNVMETGKLYHYVQVPTHEYVRFETSGQSRSATIKENFQVVQDPYRLGNVIKRREIEEPLQPDMLKMPYKILTRRRKYFMVERNGGKREYAVMMDRSTHRGHELYQLEVEDVLNSPSPRTETRSINDVASMANYLIEEYSLEPTTLTKNQWLMSLPN
Ga0209235_10061467F041660N/AMIVSHDTKRILGISSLVLILLLLLARGLPLPFPGSQPTASPRIRNAPSLIFSDNVSFNGPAPTFNLTLIQFHSYMWKFNVTAGSVKIDLTDPKTGSIFWTVGPSSLGQWHLNGTGSVGFNWTAPASTYYSMVLENLNISPSQLSSNWFSSGSPYFSCDIHVWDLDTLEVHFL
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