NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1007708

Scaffold Ga0209235_1007708


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1007708 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6024
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006078Metagenome382Y
F013746Metagenome / Metatranscriptome268Y
F041114Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10077082F013746N/AMAKVSQMRVGHPRSLLAGGLGVFSSLLAIGWALFGYNLPATVNLASIQPDNLMLAQFGVAFVVLIGSGLMLARYTRLGGAINILGGLATVGLGLLYARSLEQAARSASLQGIPLHFSQVYTAPLVIPVDRLVSTLLVVPVFPIATLLVISGLGSLATYRMHRPHRVEPQPKQAVAVQTTN
Ga0209235_10077085F006078AGGAMTRCMQAQKTAGLGAVTPLEPKVKVAPQSVFYALHTCRGTCASGCGVSQTRVAEIVFGIEIVEWDLCSVCLSRTGFLEYFNSLPSATPREAEEIKILLGISNETLERQNRSTPPMT
Ga0209235_10077086F041114N/AMLLLFTGCMGAIAATTAMGAGAAITGAALQQLLVAEVISTIIAFVGGALVMRNR
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