NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1009452

Scaffold Ga0209235_1009452


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1009452 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5416
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002498Metagenome / Metatranscriptome553Y
F004048Metagenome455Y
F016137Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10094524F016137GAGMAELDVEIGKVQHEMSERQARGKPTVDLERRLEELEGQKHDLVERLEALWSA
Ga0209235_10094525F004048N/AMPYWYRQIVWGRLDRYHSTGGIMSKPIILSKETVTVPGSLLVAELMLPEFLKRKMSLDEWKILIASHMVRFKAYNKGRMNRLLGKIALAPRELFFLLLFEIPAASSGGLSGPVLYFPSPIFLLAALWIRRSLRKSLKRQEFELDRKVAKQLGTQQVSQTLEKIQNLDQKRIPTNLRLPYVACWNPSIKERIGELSNPRLEHLPRPSRIPKIGLRGRVIITVAGFAIFWGSGLVEGNIYARGQSMVVCMDTTCSALVVIAAVGFWMAIIGGISIVIWVLRRFL
Ga0209235_10094526F002498AGGVKTQERIYSLNKGVDSLSKEEHGLFFDAMQRLGLPNEVKQAAVALYLDFKSRPIGEYNADHKNLEIFLMASVSIAAKAMGDLRTDHEFESRMFVNREKLADAEERIIKSFGVQDSILPFPDLVSQLTTRQIESMAEGFAERGLVSSNEREELVRRTYDYLDAAVERGLGPKMSYRGRAAGVMLKAVRDLELQIPEMDIARAAGFDKRTMATNADVIDALLKDSKSSRRKET
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