NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1010081

Scaffold Ga0209235_1010081


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1010081 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5235
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024084Metagenome207N
F043826Metagenome155Y
F055991Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10100813F055991N/ALPKSKPAPDHLSSHQLFQEFPVATLDELVIQLEKTGQGIDVLTIEGVPHLACGKALANILVQTDAVKHVPGDLLAIYQYCQGCKIAVRVL
Ga0209235_10100814F043826GAGGVVRAFGRFLKGTPGFVKVILLVQAVVIVGLSAWMYNEYANNQYLQTYLISLFQGKGSIIAFLGLGGLLITALCGILLKAGNILGEIEHLSEEATDRMDARKSGPEMPTPMPVLKIAEAEPVDEVGRLHRSLRRWNEQHGKNRKATP
Ga0209235_10100815F024084N/AMPTPKRLKDLQGTINEELLKSSLPEIRIDGFRHPDQALEITFERETLTGENREKLWEIINTHYKKLLRELELKE
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