NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1010779

Scaffold Ga0209235_1010779


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1010779 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5057
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F034123Metagenome175N
F035684Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10107793F034123GGTGGMRSMKGLLDLGGKNVLRLGLLVFSTLLIVSGSVFFYDRLVYERALSVSGVITGSGSTTQTGFNPAPGTILILAVSAVLISLSVFGFLREAFRGRRNRNALAKESPPTDSVSLPLEIDPPLQVPSMQRDWEEAPKKEESKH
Ga0209235_10107794F035684GAGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSVQWLFQGAAGLGLGQLVVTEGFGTSSVIDASRFWISIFYLTLSVCSVAGVNVYLAAVRRKTAIASVFSGTITTPMVSVSVLFVSSYLSGVDVSFTPLTIVILIVPALLVGLCAYGILHRTFKRIGKSAGPELSPASVSVPVETPKIYESLDLTAILGDWEESQKKDRVA
Ga0209235_10107795F002368N/AMAIQLTPTRIKGSKYLLIPKDLARLLEIEDKSILNLTIEESETGQRLVYSIRERTHQAAE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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