NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1023877

Scaffold Ga0209235_1023877


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1023877 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3237
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000611Metagenome / Metatranscriptome987Y
F007303Metagenome / Metatranscriptome353Y
F081123Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10238772F000611N/AMNFPTYVFATVNSGRATKVVEELKRNSQIDIIAPVTGRWDLVLRLKPNTPHNIYQTVREIREISDVRTTDTHTGFDGMQPTKKLESQMALGVSVLTCEHNTSESVIKQLSSIPGFIEATTVPGQFDIVALWQAKTSEDIVKNSVERVTNLPGIFKSETLLAYAPFFKA
Ga0209235_10238774F081123N/AMIDSERLLKDLNLRLAHFGDSDVASARSLLPYSIPPSNARQRCLEIAAKLVFKIE
Ga0209235_10238775F007303GAGMSSAMGTKEFLDFQQTIRDLERQVDILLKEAATNGPSQRTRELTEKVYILAERAKQIRLQDARSQSTTNQSILEKLPKQFDEDFGKFKGLITFVEWVRKQHYNATGHNLGRTYGSFGSKEISPGHHHGKLLIDTLEIRCDACGNESPHSERRDHPIHVLLHDRGQWEVCTGQSDCECKGYGGKGVRIGVDLSTERAGKRRA
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