NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1088100

Scaffold Ga0209235_1088100


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1088100 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1367
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063430Metagenome129N
F068642Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10881001F063430GGAMGRARPDLIRVLYENPPGPQAGIVLVRRVRGREYETRIGPRGYLSQIEAAAFLKKSLMTVNRYVRLGLLRDVTRHGISMIQLAELRRFKREQLDEGKGGRLRRWFGTKRRGTERR
Ga0209235_10881002F068642AGGAGMSTRAKREVPEALRRHNEEQQRNPEMVLQDLGTQVRVVVLWRQRDDDPERWIYLERMYPSEFSYEAVKERWGGGAYRIRLFGAWDRARRQERYITQVAFWIYRGYPPTPALRARMRGQDGVG

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