Scaffold Ga0209237

Basic Information
Taxon OID	3300026297 Open in IMG/M
Scaffold ID	Ga0209237_1001447 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209237_1001447 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14078
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14078

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (73.68%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008999	Metagenome	324	Y
F041660	Metagenome	159	Y
F050245	Metagenome	145	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_100144711	F050245	AGGAG	LRSQVRAEIRYYIDAHKAQRFKLNLFELMSLNSFPNPVNQTLYFNNDEHEVPFTYSIRGRRYEQKPFKERFKLKLSDKWIFEVKNTRSEHGRFIRHKRRNEMLPLREILSRVKQMSRLGRVRIPHKLGIYAAASYSRNHFLESDRGLRVTMDEDVRYFTFEGLTGTTLGVSNRAIVELKIPPGRTSSPLVRKIHVLLRKENAEQGISKKATIFNLIEDRARKSGEAYKEPHHNTEIKAKVALDAEDQDIFPRIRSDLSEGKIEGFRLSDSYANVMETGKLYHYVQVPTHEYVRFETSGQSRSATIKENFQVVQDPYRLGNVIKRREVEEPIQPDMLKMPYKILTRRRKYFMIERNEGNREYAVMMDRSTHRGHELYQLEVEDVLNSPSQRTETRSINDVASMANYLIEEYSLEPTTLTKNQWLMSLPN
Ga0209237_100144718	F008999	N/A	LAELSVDTTRVAKKLKWYGMTVVKRYLTKDKDSRDLRDVHSNPEFYDKGIDLVLNLPNAQKRTIDLKVDSYYGSDPSRRTRGLCNPDSGFILFETISQLQYDRSRTVSANGTLPIRQRADVPGWFFTSSADEVYYYFLALLNNETELNPLYAQYVELVKGNQPTDEVENRLLQELRVDRDLLVSFSLSEARAWYETVPETVFHGYAPAPNPSYLTLSKRVKRDLFISSGIGKNHGSIFSMVKPKPASH
Ga0209237_10014475	F041660	AGAAGG	MVSHETKRVLGIASMVLILILLLARTLPLPFPGSPPAVIPRNPGGPNGYEPALIFNDNVSFTTGTPTFNLTLTQSHSYMWKFNVTTGSVNINLTDPKTGSVFWTVGPRSSGQWHLNGTGIVSFNWTAPASTYYSLVLVNQNLSPWLSNEFLYTSPDSSCDIHVWDLNARAPLRVIF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209237_1001447

Overview

Ecosystem & Geography

Associated Families

Sequences