NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1003442

Scaffold Ga0209237_1003442


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1003442 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9618
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009672Metagenome / Metatranscriptome314N
F022852Metagenome / Metatranscriptome212N
F073400Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_100344210F009672GGCGGVRLLDTTPRWLRLTLGCSSGVLVVTGTGFFFGQLTQFDITPFTLLLHLTLALAVSSWILNFRIRISPDRKPLVAIGVALVVGSIWSSVQQWIGYFQTGVVSDIMLVAGATLMDIAGGCVIYTLFHLNILKK
Ga0209237_10034423F073400GAGGMRSNQLKRFLNSDVVGQLNNGLFFEGHVLNKAGKPSVLERDSQATRQISATRVKWLAKAVRYC
Ga0209237_10034424F022852N/ALTVTIPYSVRISRELLDEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKNDEVGLQKVTVAAYPKRIHDQTLQR
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