NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1005079

Scaffold Ga0209237_1005079


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1005079 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7961
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023820Metagenome208Y
F028467Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_10050792F023820N/AMSSPAKTSVLRAILPNHASTKIALALGTPGKTDSKNVTLTSGNMTTGAIVDRIRELSKLRDEILQVVRQLNLTREAASSPVDQLDYQTELESTRRELDETRNQYQEIQGRIENIQRKIDDSKKKIAALTEISQTGFATDQLESEDGDFRRVLGRLPVKKSDTAQKALQSQFKDQAIVAVGNKKRDGIYILLAVLKDKSSQALQTLLLYDFTPIEIPEFRSHDLNSEAQVEEDRVKVLAKELDELNLKRDELRNKAGQTLNHRLDQVVDALMLLRGILKLGEGTHASRIYAHLQKALPDETVSNLSRTGVIELESSS
Ga0209237_10050793F028467AGAAGVSGPDLEVQATPRIKYALNAAIQLTGKEEFAKISGIETSFLDGILERNGEYISVAIVTLACQVNRSHNDPELARSSISECLKGAIWRLPQQSNNAETRAPAESSTKRSRRAEFFRVQKRAGRIYDPNALRIVGFSVNLFTFLLLGYFLGGIVLGPIFGFGSCIGVVAGSPWIAPCAGSGIGLVFGSIIGLAYTYYYFVKKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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