NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1006558

Scaffold Ga0209237_1006558


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1006558 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7019
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008019Metagenome340Y
F012566Metagenome / Metatranscriptome279Y
F031444Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_10065582F008019GGALGVRKKIAISIVLIIIVALAVWQFTSPQLLPMVGSKYSVFGPYSNRGSWTIMEMMRYGNVYLAISISNVTFPRTGIGTDYSLVISDVNQTITNSIVKGFGVRVTGMNIQDSVDGSTSTWGNGNAVSDAAQATGIFFFKTSTNHMLRFTVAFQLYDLLPLGSIPDQTVTRSFNITQTVL
Ga0209237_10065585F012566AGCAGGMFEDAVESLGNIGRNIGRNTEIENFSTQGDPDDNRICKQILESDPAIRVAAFIEGAEVTGYAETARTKNVLSQSGDLRKKIGFWVSIITEMARQTDNLFGSTESICVTHKGLKMVTVPLSARRSLGLSLDRSADSEKIILKITAKFSLGPTV
Ga0209237_10065586F031444GGALDLKTDFASVFQSSVKDGLRNTLGETVMLTIVPLLKQTLQTYAEKPGDFHRELQFYFGFGALTLERMIVKELFQRLNLHYPSGNELDFETSIGLARNDLSSFQRGAARK
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