NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1018397

Scaffold Ga0209237_1018397


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1018397 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4036
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F034123Metagenome175N
F035684Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0209237_10183973F034123GGTGGMKGMKRLFDLGGKNVLRLGLLVLSTLLIVGGSVFFYDRLVYERALSVGGVITGSGSTTQTGLNPAPGTILILAVSAVLISLSVFGFLREVFRGKLNGKALAKESSPTVSVTLPLEIGPSLQVPSMQRDWEEATKKEEGKH
Ga0209237_10183974F035684AGGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSAQWLFQGAAGLGLGQLVVTEGFGTSSVIDASRFWISIFYLILSVCSVAGLNVYLAAVRRKTAIASVFSGTITTPTVSVSVLFVSSYLSGIDVRFTPLTIVILIVPALLVGVGAYGFLHKTFKRIGKSTGPELLPASVSAPVEAPKVYESLDLKDILGEWEESQKKDRVA
Ga0209237_10183975F002368N/AMAIQLTPTKIKGSKYLLIPKDLARLLEIEDKSILNLTIKESETGQRLVYSIRERTHHPAE
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Bioinformatics & Integrated Biology Lab
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Biomedical Sciences Research Center "Alexander Fleming"
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