NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1000502

Scaffold Ga0209236_1000502


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1000502 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22654
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (39.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017200Metagenome242Y
F018153Metagenome236Y
F050273Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209236_100050210F018153N/AVDRIFSRRETIVLVLLAIAVLTAVTYGVVTYQAPYGCGPNGVAQGPSIDWQVLVEPCIYVYFTAIVGGSVLLILIIPVPEKKSSSVPAQ
Ga0209236_100050218F050273N/ALSYSLPPDQGFALLQLLLYIFSFVSLILIFLYIAAERPGEAKKKTAEEEE
Ga0209236_10005027F017200GGAGMQPITYSVSKGLRAGAIGGFIGSIVLGITGEIGAIAMNQELFYTTIARKLGFADSSVLGGWTLHFLVGIVAGSLFVGATAAIRRFALTATKKAIWVGILGGIAIWIVVYVPVTAILLPADLTDATFGGGTFVLHLLYGVVTAIVSLPLLRRMVQTKTAA
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