NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1000639

Scaffold Ga0209236_1000639


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1000639 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20452
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009323Metagenome / Metatranscriptome319Y
F031412Metagenome182Y
F066620Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10006394F066620N/ALASLGLGGPVGFCFATTGFCSALLVARVWEYVSLESYLRCGLSCPIRSSDVFQLHHFYYGLAMLLLATSFLAVTKRQRVRWDAALMFGIGAGLCIDEAGLLLLRVPYNDLLSIFLLALFGSAIFGGTINAAFRDGTREFRILDRADILTLLSILLGMAGVLYLDRPLITIVEIAGGVSWAFALALATLFGKKHFLRVWARPG
Ga0209236_10006397F031412AGGLSRFRRPLPSSPDDARLLEVASSLGQQLDLPGLNLRDIRWMEWIPAGRSTRSVPSDWCMFLRHSMILPARMMGKLTVEEWRPIIASSLVFEKKIRRSMRGTTFLLTGLPLIVSLGGTITAAILLQMSWIIFLYPVLLFPLAILGGRRYNADLKRARLEADSQTSSVIGKDALLQVMKKIDMMGLDDIDRLKSGRGGRRLASLPSITERIDNLQGLSSLASFSSI
Ga0209236_10006398F009323AGAAGGMLDPIVIPTLYFISVVELILQAGVFFYAYRVTKLTGSFRAWTLIIAAFALLTVRNVVSLLFELMLPTDQISTLIESVGVTTTILSSAVNLVAGVALFLGMFGLVKRFQNQPETP
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