NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1000709

Scaffold Ga0209236_1000709


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1000709 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19768
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035244Metagenome172N
F097102Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_100070916F035244N/AMSKPGAVNFPRINLISILAGALALASVFLPWWGIDASGFGSVVSPRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTWNIRPLIGSFILGVLTSIAYLGVVSYAVTNSCNGQSNCLSGPFGSETVFGVTLNWGFQTGFYLYLFAGALTLVGLGFHRIFHKTTPIRETAQASVAAS
Ga0209236_100070918F097102AGGVEIEVYNCGCKVRIYEVEFGESKNDLTERPSLISDYSPCSKHKNVRRIPPREARLLKVRGEHEAFLNE
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